About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53649071_53650463_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53649071 - 53650463
Intron Length:
1393

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTGTTTTCATT
Flanking Amino Acid:
RAAAMKLPLNKFPGFAKPGM
Intron Amino Acid Position:
205

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.5
0.46
1.1
64.9
34.7
Major BPS
85
0.87
0.8
85.6
23
Major PPT
77.7
0.62
0.9
79
34.3
Minor 5ss
30.3
-2.3
3.5
37.5
41.7
Minor BPS
56.6
0.29
1.8
78.3
39.3

Associated Gene:

Gene:
SNX9
Ensembl Gene ID:
ENSAPLG00000015762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037492
53626248 - 53672463
46216
ENSAPLT00000016467
53626248 - 53673905
47658