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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53656256_53660133_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
53656256 - 53660133
Intron Length:
3878

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CCAAATACTATAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAC
U12 Branch Point Sequence:
TTTTTCCAAATA
Flanking Amino Acid:
PDAPDLDMVEIEQKCDAVGR
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
80.8
34.4
Major BPS
72.4
0.56
1
79.3
29.5
Major PPT
59
0.2
0.9
50.9
37.5
Minor 5ss
44.3
-0.6
2.9
62.8
41.9
Minor BPS
56.6
0.2
2
75.29
36.6

Associated Gene:

Gene:
SNX9
Ensembl Gene ID:
ENSAPLG00000015762
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037492
53626248 - 53672463
46216
ENSAPLT00000016467
53626248 - 53673905
47658