Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53668183_53669225_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53668183 - 53669225

Intron Length:

1043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAAGCA

5'SS Class:

major

3'SS Sequence:

CTTTGTTTATTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAC

U12 Branch Point Sequence:

TTTTTACTAACG

Flanking Amino Acid:

EEIASLVADQPKKDLHFLME

Intron Amino Acid Position:

480

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

73.1

0.54

63.8

34.2

Major BPS

86.6

0.91

0.8

77.7

36.7

Major PPT

77.6

0.62

0.9

35.1

Minor 5ss

36.2

-1.6

3.4

48.1

47.6

Minor BPS

58.4

0.13

73.17

Associated Gene:

Gene:

SNX9

Ensembl Gene ID:

ENSAPLG00000015762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037492

53626248 - 53672463

46216

ENSAPLT00000016467

53626248 - 53673905

47658