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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53698803_53707171_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

53698803 - 53707171

Intron Length:

8369

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGTGAC

5'SS Class:

strong_major

3'SS Sequence:

CTGTCCTCTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTACAA

U12 Branch Point Sequence:

GTTTACAAAATT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.89

0.9

77.6

30.7

Major BPS

73.5

0.59

81.3

29.9

Major PPT

78.5

0.64

0.8

69.6

36.7

Minor 5ss

33.1

-1.9

3.2

40.3

40.2

Minor BPS

49.2

0.02

2.1

74.85

41.7

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035800

53697778 - 53753902

56125