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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53707333_53709530_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53707333 - 53709530

Intron Length:

2198

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTTAGTACT

5'SS Class:

major

3'SS Sequence:

CTGAATTTTACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTTAT

U12 Branch Point Sequence:

TGTTGCTGAATT

Flanking Amino Acid:

NHYESGNSFFWNQLLHVPFK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.9

0.66

1.1

78.3

35.5

Major BPS

75.1

0.62

65.6

Major PPT

75.5

0.57

68.2

41.9

Minor 5ss

34.9

-1.7

2.6

42.8

37.6

Minor BPS

62.4

0.47

1.9

81.73

39.8

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667

ENSAPLT00000035800

53697778 - 53753902

56125