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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53718368_53720089_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53718368 - 53720089
Intron Length:
1722

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAACAAC
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTATTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCCATTATTT
Flanking Amino Acid:
PLFWEQPGLQVGSHHLRLNR
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.73
1
74.7
35.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.8
0.71
0.8
82.2
34.4
Minor 5ss
39
-1.2
3
51.2
45.7
Minor BPS
60.7
0.41
1.9
82.89
38.1

Associated Gene:

Gene:
SYNJ2
Ensembl Gene ID:
ENSAPLG00000002563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017388
53690370 - 53753970
63601
ENSAPLT00000002654
53700236 - 53753902
53667
ENSAPLT00000035800
53697778 - 53753902
56125