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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53720152_53720399_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

53720152 - 53720399

Intron Length:

248

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TGAAAAACCTGAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TCTTTCTGAAAA

Flanking Amino Acid:

GLEANAPAFDRNAGWYEKER

Intron Amino Acid Position:

219

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.3

32.2

Major BPS

82.1

0.8

71.6

36.4

Major PPT

43.4

-0.3

1.7

41.3

42.6

Minor 5ss

48.4

-0.1

2.8

67.4

Minor BPS

64.1

0.44

1.5

73.17

38.4

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667