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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53720152_53722980_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53720152 - 53722980

Intron Length:

2829

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

ACTTTTGCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAC

U12 Branch Point Sequence:

TGTTCTGTACTT

Flanking Amino Acid:

GLEANAPAFDRHMMLLKEQY

Intron Amino Acid Position:

159

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.3

32.2

Major BPS

73.7

0.59

0.9

63.6

35.1

Major PPT

75.2

0.57

0.9

70.1

35.8

Minor 5ss

48.4

-0.1

2.8

67.4

Minor BPS

50.2

0.08

2.2

75.88

41.7

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035800

53697778 - 53753902

56125