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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53723078_53726489_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53723078 - 53726489

Intron Length:

3412

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAAGCA

5'SS Class:

strong_major

3'SS Sequence:

AATTTTTAAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

AATTTTTAAACA

Flanking Amino Acid:

GEEVLNRAFKKLLWASSHAA

Intron Amino Acid Position:

261

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

0.9

71.1

32.5

Major BPS

87.3

0.93

0.8

36.5

Major PPT

71.1

0.48

67.2

42.1

Minor 5ss

30.1

-2.3

3.3

39.5

45.9

Minor BPS

61.5

0.36

1.6

70.12

36.2

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667

ENSAPLT00000035800

53697778 - 53753902

56125