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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53727150_53727367_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

53727150 - 53727367

Intron Length:

218

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

GCACCAAATCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTAAAAA

U12 Branch Point Sequence:

TTTTTCTGCACC

Flanking Amino Acid:

NSVQSFVALEVLLTQLESLG

Intron Amino Acid Position:

346

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

92.4

0.7

83.9

30.3

Major BPS

61.4

0.28

1.1

67.9

34.4

Major PPT

51.7

0.04

41.2

37.3

Minor 5ss

38.4

-1.3

2.9

48.7

47.5

Minor BPS

62.1

0.36

1.9

78.77

36.7

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035800

53697778 - 53753902

56125

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667