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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5372750_5379330_R

Intron Information:

Intron Rank:
153381
Intron Class:
major
Intron Phase:
Intron Coordinates:
5372750 - 5379330
Intron Length:
6581

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
TGTTCCTACACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
79.6
34.4
Major BPS
52
0.05
1.3
59
44.6
Major PPT
74.6
0.55
0.9
69.2
36
Minor 5ss
36.8
-1.5
3.3
44.3
43.6
Minor BPS
60
0.31
2.1
75.93
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029999
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044357
5372316 - 5382004
9689