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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53728577_53730911_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53728577 - 53730911

Intron Length:

2335

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGACTT

5'SS Class:

strong_major

3'SS Sequence:

CCCTTCTCAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TAGTAAC

U12 Branch Point Sequence:

CCCTTCTCAACA

Flanking Amino Acid:

PKLSGVSEFQDDESSPPDIF

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

75.5

40.6

Major BPS

66.7

0.42

1.2

67.6

36.5

Major PPT

73.4

0.53

0.8

68.9

30.2

Minor 5ss

37.5

-1.4

3.3

49.3

46.4

Minor BPS

0.25

1.6

62.43

44.3

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667

ENSAPLT00000035800

53697778 - 53753902

56125