Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53730997_53731634_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53730997 - 53731634

Intron Length:

638

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTGTTTGTTCCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

ATTCCATTAAAT

Flanking Amino Acid:

ELSAGNIVNASTTNKKMWGE

Intron Amino Acid Position:

543

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

80.2

30.6

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

84.3

0.77

0.9

76.9

42.1

Minor 5ss

38.1

-1.3

3.1

48.5

47.7

Minor BPS

65.3

0.56

1.7

83.22

36.6

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667

ENSAPLT00000035800

53697778 - 53753902

56125