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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53731776_53734334_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53731776 - 53734334

Intron Length:

2559

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATAAAA

5'SS Class:

strong_major

3'SS Sequence:

CTTTTTTATACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTTTTATACAG

Flanking Amino Acid:

FVRPFHVPFIRDVAIDTVKT

Intron Amino Acid Position:

590

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

0.9

78.8

29.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

87.9

0.85

0.8

29.9

Minor 5ss

32.9

-2

2.9

40.3

45.4

Minor BPS

47.1

-0.3

60.72

41.4

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667

ENSAPLT00000035800

53697778 - 53753902

56125