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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53734528_53736134_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

53734528 - 53736134

Intron Length:

1607

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGAGTC

5'SS Class:

strong_major

3'SS Sequence:

AACTATAAACTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

ATTTAAC

U12 Branch Point Sequence:

ATAACATTAACC

Flanking Amino Acid:

EITQKLSFPMGRNVFSHDYV

Intron Amino Acid Position:

655

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.2

0.81

0.9

75.1

33.1

Major BPS

80.9

0.77

0.8

81.7

25.4

Major PPT

50.4

0.01

42.5

41.2

Minor 5ss

35.1

-1.7

3.5

47.6

42.6

Minor BPS

64.5

0.44

1.6

72.42

37.6

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667

ENSAPLT00000035800

53697778 - 53753902

56125