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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53736294_53736538_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53736294 - 53736538

Intron Length:

245

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAA|GTAAGGCAG

5'SS Class:

major

3'SS Sequence:

TTTCTCTTCATAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TGTGACTTAATC

Flanking Amino Acid:

QLQQQKSSGKIFKDFHEGTI

Intron Amino Acid Position:

708

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.1

0.64

63.3

42.8

Major BPS

78.2

0.7

77.9

32.1

Major PPT

83.9

0.76

0.6

80.2

25.3

Minor 5ss

31.8

-2.1

3.3

38.8

40.7

Minor BPS

64.4

0.43

1.6

72.11

39.1

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667

ENSAPLT00000035800

53697778 - 53753902

56125