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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53742096_53743315_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53742096 - 53743315

Intron Length:

1220

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGACCA

5'SS Class:

strong_major

3'SS Sequence:

TTGTCTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AAACAAT

U12 Branch Point Sequence:

ATTGCTTGGAAA

Flanking Amino Acid:

LRVMDIDGVKVRGRTVKIRP

Intron Amino Acid Position:

899

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.4

0.93

0.8

74.4

Major BPS

49.4

-0

1.3

57.1

35.8

Major PPT

78.8

0.65

0.9

77.4

36.9

Minor 5ss

32.2

-2

40.3

45.3

Minor BPS

48.6

-0.1

1.7

62.14

37.8

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035800

53697778 - 53753902

56125

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667