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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53743991_53746555_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53743991 - 53746555
Intron Length:
2565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTAT
5'SS Class:
strong_major
3'SS Sequence:
GTGATTTCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTTCTGTGATT
Flanking Amino Acid:
KSGQNPQLYKDDTALADLKQ
Intron Amino Acid Position:
1006

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
86.4
23.9
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
70.8
0.47
1
61.9
44.3
Minor 5ss
41.2
-1
3
57.8
46.8
Minor BPS
63.4
0.5
2
86.34
34.1

Associated Gene:

Gene:
SYNJ2
Ensembl Gene ID:
ENSAPLG00000002563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017388
53690370 - 53753970
63601
ENSAPLT00000002654
53700236 - 53753902
53667
ENSAPLT00000035800
53697778 - 53753902
56125