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Intron Name: Anas_platyrhynchos_platyrhynchos_3_53746691_53747791_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53746691 - 53747791

Intron Length:

1101

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTGAGTGCC

5'SS Class:

strong_major

3'SS Sequence:

GTTCCTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCTCAC

U12 Branch Point Sequence:

AGCTGCTGAATC

Flanking Amino Acid:

LQPPQRPPPPAGSSGKKSSS

Intron Amino Acid Position:

1051

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.9

0.78

0.9

71.1

32.7

Major BPS

76.2

0.65

0.9

77.4

26.5

Major PPT

84.1

0.77

0.8

Minor 5ss

28.6

-2.4

32.8

35.9

Minor BPS

49.1

-0

1.9

58.27

40.8

Associated Gene:

Gene:

SYNJ2

Ensembl Gene ID:

ENSAPLG00000002563

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000035800

53697778 - 53753902

56125

ENSAPLT00000017388

53690370 - 53753970

63601

ENSAPLT00000002654

53700236 - 53753902

53667