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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53748760_53750092_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53748760 - 53750092
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
AAGCCAGTAACG
Flanking Amino Acid:
AIRCLMEAKGGLQEDAPKPA
Intron Amino Acid Position:
1125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
90.8
0.92
0.7
88.7
28.3
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
44.2
-0.5
2.2
49.97
43.3

Associated Gene:

Gene:
SYNJ2
Ensembl Gene ID:
ENSAPLG00000002563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035800
53697778 - 53753902
56125
ENSAPLT00000017388
53690370 - 53753970
63601
ENSAPLT00000002654
53700236 - 53753902
53667