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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53750296_53753107_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53750296 - 53753107
Intron Length:
2812

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TCTCCCCCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TGTTCTCAAACT
Flanking Amino Acid:
LQRTGVKMENATSTDEQCDH
Intron Amino Acid Position:
1193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.8
0.68
1
71.3
35.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
76.5
0.6
0.7
73.5
24.7
Minor 5ss
37.5
-1.4
2.9
48.1
41.3
Minor BPS
57.8
0.32
2
81.32
40.3

Associated Gene:

Gene:
SYNJ2
Ensembl Gene ID:
ENSAPLG00000002563
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035800
53697778 - 53753902
56125
ENSAPLT00000017388
53690370 - 53753970
63601
ENSAPLT00000002654
53700236 - 53753902
53667