About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53764310_53765103_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53764310 - 53765103
Intron Length:
794

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTAATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TTTTCTTTAATT
Flanking Amino Acid:
EEEYSQCWPKTWLASDCPTL
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
78.8
0.65
0.9
78.8
33.5
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
90.6
1.35
0.7
99.65
21.1

Associated Gene:

Gene:
SERAC1
Ensembl Gene ID:
ENSAPLG00000002831
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002884
53758950 - 53774156
15207