Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53769310_53771071_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53769310 - 53771071

Intron Length:

1762

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATT|GTAAGAGGA

5'SS Class:

major

3'SS Sequence:

TACATGATACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTTAT

U12 Branch Point Sequence:

TATTTGTTACAT

Flanking Amino Acid:

YKPISLFLSIVSSHCDKIEA

Intron Amino Acid Position:

149

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.47

1.1

60.8

Major BPS

83.6

0.84

0.8

71.9

35.8

Major PPT

61.1

0.25

1.1

52.1

45.5

Minor 5ss

32.4

-2

3.4

44.2

44.6

Minor BPS

48.2

-0

2.3

73.75

Associated Gene:

Gene:

SERAC1

Ensembl Gene ID:

ENSAPLG00000002831

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002884

53758950 - 53774156

15207