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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53771291_53773079_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53771291 - 53773079
Intron Length:
1789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTACTTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAC
U12 Branch Point Sequence:
TTGTGTTTACTT
Flanking Amino Acid:
PPPSLPKTKNDYLIEDQLRL
Intron Amino Acid Position:
76

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
73.1
0.57
0.9
73.7
27.1
Major PPT
81.3
0.7
0.8
76.2
32.1
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
53.3
0.18
2
74.76
43.2

Associated Gene:

Gene:
SERAC1
Ensembl Gene ID:
ENSAPLG00000002831
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002884
53758950 - 53774156
15207