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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53784983_53787674_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53784983 - 53787674
Intron Length:
2692

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGGGCG
5'SS Class:
major
3'SS Sequence:
TTTGTCTCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTGTCTCTACA
Flanking Amino Acid:
VNVLKGVLIECDPAMKQFLL
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
59.2
39.7
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
86.5
0.82
0.7
80.7
31.4
Minor 5ss
24.2
-3
3.3
26.6
37.9
Minor BPS
52.1
0.06
2
71.02
41

Associated Gene:

Gene:
GTF2H5
Ensembl Gene ID:
ENSAPLG00000028372
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035355
53784243 - 53787855
3613