Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5380830_5381835_R

Intron Information:

Intron Rank:

153383

Intron Class:

major

Intron Phase:

Intron Coordinates:

5380830 - 5381835

Intron Length:

1006

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAACTACT

5'SS Class:

strong_major

3'SS Sequence:

TGTTTTCTCCTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTGAT

U12 Branch Point Sequence:

TGTGGCTGAAAA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

1.1

84.4

33.5

Major BPS

67.4

0.43

1.1

57.1

41.8

Major PPT

80.3

0.68

0.8

73.8

36.9

Minor 5ss

43.9

-0.7

2.6

61.4

42.9

Minor BPS

47.5

-0.2

2.1

62.41

43.3

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029999

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000044357

5372316 - 5382004

9689