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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53830062_53830193_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
53830062 - 53830193
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAGCAT
U12 Branch Point Sequence:
ATGTTTGCAGCA
Flanking Amino Acid:
MIYPSDSNILCLSW
Intron Amino Acid Position:
5

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1.3
75.3
40.8
Major BPS
48.7
-0
1.4
57.8
39
Major PPT
85.5
0.8
0.8
80.4
31.5
Minor 5ss
32.3
-2
2.8
43.1
43.7
Minor BPS
40.8
-0.7
2.2
52.95
39.9

Associated Gene:

Gene:
TULP4
Ensembl Gene ID:
ENSAPLG00000013475
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029077
53830048 - 53948874
118827