Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53830408_53898207_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53830408 - 53898207

Intron Length:

67800

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCAAA

5'SS Class:

strong_major

3'SS Sequence:

GTAATCTTTTAAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTAAT

U12 Branch Point Sequence:

TTGTTTGTAATC

Flanking Amino Acid:

NFNLRGHNSEVVLVRWNEPF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

83.2

30.8

Major BPS

84.4

0.85

1.1

34.5

Major PPT

65.9

0.36

1.1

68.3

42.2

Minor 5ss

38.7

-1.3

2.8

48.1

47.6

Minor BPS

55.1

0.14

68.78

Associated Gene:

Gene:

TULP4

Ensembl Gene ID:

ENSAPLG00000013475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029077

53830048 - 53948874

118827

ENSAPLT00000014041

53830156 - 53948874

118719