Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53918570_53922332_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

53918570 - 53922332

Intron Length:

3763

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACAAAAG

5'SS Class:

major

3'SS Sequence:

TTTGCTCTTTCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTAAT

U12 Branch Point Sequence:

GTTACTGCAAAC

Flanking Amino Acid:

SPTIIRSGLKDVVVQWCTQG

Intron Amino Acid Position:

287

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.3

0.53

1.1

65.1

40.7

Major BPS

94.5

1.11

0.6

92.2

14.6

Major PPT

87.6

0.84

0.7

85.1

29.7

Minor 5ss

31.1

-2.2

3.2

39.5

Minor BPS

43.5

-0.5

2.2

57.54

40.8

Associated Gene:

Gene:

TULP4

Ensembl Gene ID:

ENSAPLG00000013475

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000029077

53830048 - 53948874

118827

ENSAPLT00000014041

53830156 - 53948874

118719