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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53985017_53985599_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
53985017 - 53985599
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TATTCTTTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
76.8
31.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.7
0.76
0.8
77.6
34.4
Minor 5ss
32.7
-2
3
40.8
39.5
Minor BPS
85.6
1.19
0.9
93.01
28.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013329
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013909
53947895 - 53992653
44759