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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53988968_53990178_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
53988968 - 53990178
Intron Length:
1211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGATTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTAAGAT
U12 Branch Point Sequence:
GTTTGTTTTATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
81.9
32.3
Major BPS
49.8
-0
1.3
49.1
44.8
Major PPT
81.9
0.72
0.8
76.5
37.7
Minor 5ss
44.4
-0.6
3.2
66.3
44.6
Minor BPS
50.5
0.01
2
67.32
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013329
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013909
53947895 - 53992653
44759