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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53990279_53990990_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
53990279 - 53990990
Intron Length:
712

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAGTTGTG
5'SS Class:
major
3'SS Sequence:
TACTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTCTTACTT
Flanking Amino Acid:
ILLPLLLLYNDPFFPLSFLV
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.5
0.39
1.2
60.3
44.6
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
82.7
0.74
0.8
76.9
35.7
Minor 5ss
35.5
-1.7
3.5
49
47.2
Minor BPS
75.4
0.88
1.5
91.07
32.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013329
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013909
53947895 - 53992653
44759