About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_53991122_53991754_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
53991122 - 53991754
Intron Length:
633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGTG
5'SS Class:
major
3'SS Sequence:
GTTTTATTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GTTTTATTAATA
Flanking Amino Acid:
LCVYHGIRVQGERKCLTFYL
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
68.1
40.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
74.5
0.55
0.9
70.8
38.9
Minor 5ss
31.4
-2.1
3.9
45.4
49.7
Minor BPS
68.4
0.57
1.5
76.99
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013329
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013909
53947895 - 53992653
44759