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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54005662_54005947_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54005662 - 54005947
Intron Length:
286

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAA
U12 Branch Point Sequence:
GTCTCTGAAACT
Flanking Amino Acid:
SSCFWDNSSDGTCTVRWENK
Intron Amino Acid Position:
81

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
69.6
41.1
Major BPS
69.8
0.49
1
61
37.5
Major PPT
85.5
0.8
0.7
81.4
30.6
Minor 5ss
32.8
-2
3.1
39.9
40.3
Minor BPS
48.7
-0
2.3
71.8
45.5

Associated Gene:

Gene:
DYNLT1
Ensembl Gene ID:
ENSAPLG00000013313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013867
54005591 - 54007594
2004