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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54006026_54006213_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
54006026 - 54006213
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TGCTGACAAACAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TAACAATAAACT
Flanking Amino Acid:
TKLGKPFKYIVTCVIMQKNG
Intron Amino Acid Position:
55

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
68.8
38.6
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
58.2
0.19
1.1
51.9
41.1
Minor 5ss
41.5
-0.9
3
57.8
46.4
Minor BPS
46.3
-0.2
2
66.46
43

Associated Gene:

Gene:
DYNLT1
Ensembl Gene ID:
ENSAPLG00000013313
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013867
54005591 - 54007594
2004