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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54016654_54018028_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
54016654 - 54018028
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCTGAC
5'SS Class:
major
3'SS Sequence:
CCTGGGTGATTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
VVRKTEEERVRKLKMQLQQL
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.2
68.4
36.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
52.8
0.06
1.1
50.6
42.8
Minor 5ss
44.6
-0.6
3
60.6
44.5
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
SYTL3
Ensembl Gene ID:
ENSAPLG00000013171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013736
54016544 - 54043373
26830