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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54024914_54028285_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54024914 - 54028285
Intron Length:
3372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
GTATTCACTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTTGTATTCACT
Flanking Amino Acid:
LFLSLTTHIKKISKSQNDMA
Intron Amino Acid Position:
169

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
75.2
0.57
0.9
71.4
39.2
Minor 5ss
36.8
-1.5
2.7
42.7
38.3
Minor BPS
53.2
0.18
2.1
80.31
41.8

Associated Gene:

Gene:
SYTL3
Ensembl Gene ID:
ENSAPLG00000013171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013736
54016544 - 54043373
26830