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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54040916_54041764_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54040916 - 54041764
Intron Length:
849

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTATG
5'SS Class:
major
3'SS Sequence:
TTCTTTTGGGAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
ACTTGCTGAACT
Flanking Amino Acid:
PAGMLNSFVKGCLVLPDQAE
Intron Amino Acid Position:
442

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
74.4
41.9
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
65.5
0.35
1.2
70.9
38.9
Minor 5ss
45
-0.5
2.5
51.3
45.4
Minor BPS
61.6
0.44
1.9
79.25
42.7

Associated Gene:

Gene:
SYTL3
Ensembl Gene ID:
ENSAPLG00000013171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013736
54016544 - 54043373
26830