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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54041964_54043244_F

Intron Information:

Intron Rank:
11
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
54041964 - 54043244
Intron Length:
1281

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGT|GCAAGTAAG
5'SS Class:
major
3'SS Sequence:
CTTTCTTGCAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
AATCCTGTGACC
Flanking Amino Acid:
DQFLGGAKLGESLGFADALS
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67
0.4
1.4
66.5
44.6
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
57.2
0.16
1.7
67.7
37.8
Minor 5ss
26.7
-2.7
3.7
34.2
41.4
Minor BPS
48.9
-0.1
2
62.19
37.2

Associated Gene:

Gene:
SYTL3
Ensembl Gene ID:
ENSAPLG00000013171
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013736
54016544 - 54043373
26830