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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54056713_54057360_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
54056713 - 54057360
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTGCCTCAACTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CCTGCCTCAACT
Flanking Amino Acid:
VWHAEHSGMLKENAMLEYLK
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
88.1
25.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
58.6
0.19
1
52.2
37
Minor 5ss
40.3
-1.1
3.4
58.5
40.4
Minor BPS
62.7
0.48
1.7
75.75
46.8

Associated Gene:

Gene:
EZR
Ensembl Gene ID:
ENSAPLG00000012387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037010
54045718 - 54080517
34800
ENSAPLT00000012957
54045667 - 54080517
34851