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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54058307_54058384_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54058307 - 54058384
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAAGGAA
5'SS Class:
major
3'SS Sequence:
TTATGCTGTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTTAT
U12 Branch Point Sequence:
TTATGCTGTACA
Flanking Amino Acid:
DITQKLFFLQAKFGDYNKEV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1
67.7
32.5
Major BPS
79.1
0.72
1
69.3
38.4
Major PPT
74.7
0.56
1
68.8
41.8
Minor 5ss
22.4
-3.2
3.3
28
44
Minor BPS
49.2
-0
2.2
69.07
42.7

Associated Gene:

Gene:
EZR
Ensembl Gene ID:
ENSAPLG00000012387
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037010
54045718 - 54080517
34800