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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54152554_54153394_F

Intron Information:

Intron Rank:
149260
Intron Class:
major
Intron Phase:
Intron Coordinates:
54152554 - 54153394
Intron Length:
841

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TCCTCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TCATCCTCATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
70.1
40.8
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
83.3
0.75
0.8
80.6
30.2
Minor 5ss
32.8
-2
3.1
43.8
43.5
Minor BPS
56
0.27
1.8
72.99
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030264
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031045
54151996 - 54154603
2608