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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54183477_54184979_R

Intron Information:

Intron Rank:
147269
Intron Class:
major
Intron Phase:
Intron Coordinates:
54183477 - 54184979
Intron Length:
1503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGGTT
5'SS Class:
strong_major
3'SS Sequence:
CCATCCTACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
CCATCCTACACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.3
34.3
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
66.9
0.38
0.9
60.8
34
Minor 5ss
34.5
-1.8
3.9
55
49.2
Minor BPS
48.7
-0.1
2.1
59.37
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026561
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018415
54182299 - 54185029
2731