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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54186041_54186559_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54186041 - 54186559
Intron Length:
519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
GCGCTTCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTCAC
U12 Branch Point Sequence:
CCTCGCGTAACC
Flanking Amino Acid:
MESLIECPSEADAKKCPLLG
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
64.9
0.37
1
67
29.8
Major PPT
75.5
0.57
0.9
68.8
37.1
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
46
-0.3
2.4
59.23
46

Associated Gene:

Gene:
TAGAP
Ensembl Gene ID:
ENSAPLG00000006826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007083
54185792 - 54192634
6843