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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54186627_54188112_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
54186627 - 54188112
Intron Length:
1486

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GGTTTGCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TTTTTTTTGTTT
Flanking Amino Acid:
DPEDGLCHLAADGMKKRKKV
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
76.9
0.61
1
69.6
41.6
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
46.8
-0.1
3.4
81.5
34.7

Associated Gene:

Gene:
TAGAP
Ensembl Gene ID:
ENSAPLG00000006826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007083
54185792 - 54192634
6843