About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54189254_54189721_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54189254 - 54189721
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
CTTGGCCTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTCAT
U12 Branch Point Sequence:
TCATCTGTATCT
Flanking Amino Acid:
TVHLLAVVLKDFLRNIPSKL
Intron Amino Acid Position:
162

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
69.6
0.49
1.3
73.6
41.8
Major PPT
77
0.61
0.9
69.4
36.8
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
49.3
0.03
2.2
72.07
45.2

Associated Gene:

Gene:
TAGAP
Ensembl Gene ID:
ENSAPLG00000006826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007083
54185792 - 54192634
6843