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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54189832_54190479_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
54189832 - 54190479
Intron Length:
648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TGTGCTCACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTGTGCTCACTT
Flanking Amino Acid:
SKEEKIEELREVADKLPRPN
Intron Amino Acid Position:
198

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
1
79
35.3
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
65.2
0.34
0.9
63.1
38.6
Minor 5ss
39.9
-1.1
3.4
54.7
43.6
Minor BPS
48
-0
2.2
71.61
45.8

Associated Gene:

Gene:
TAGAP
Ensembl Gene ID:
ENSAPLG00000006826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007083
54185792 - 54192634
6843