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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54190676_54191129_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54190676 - 54191129
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCTGG
5'SS Class:
major
3'SS Sequence:
TTTCTGTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTGACTGAATT
Flanking Amino Acid:
LEVQKEMNDKVTVLVEFLID
Intron Amino Acid Position:
264

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.8
46.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
80.9
0.7
0.9
76.5
37.5
Minor 5ss
42.2
-0.9
3.1
56
48.2
Minor BPS
61.7
0.44
1.7
81.93
39.6

Associated Gene:

Gene:
TAGAP
Ensembl Gene ID:
ENSAPLG00000006826
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007083
54185792 - 54192634
6843