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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_54208906_54210265_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
54208906 - 54210265
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGCTT
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
ACTGTCTTGACA
Flanking Amino Acid:
EQDRRYREEKERRKLQHIQM
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.9
0.96
0.8
82.5
37
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
69.8
0.45
1
64.8
40.8
Minor 5ss
36.7
-1.5
3.5
55.8
48.4
Minor BPS
63.5
0.42
1.4
67.62
39.1

Associated Gene:

Gene:
RSPH3
Ensembl Gene ID:
ENSAPLG00000007212
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024583
54205306 - 54217259
11954
ENSAPLT00000007479
54205306 - 54217259
11954