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Intron Name: Anas_platyrhynchos_platyrhynchos_3_54237173_54250997_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

54237173 - 54250997

Intron Length:

13825

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAT|GTAAGTACA

5'SS Class:

strong_major

3'SS Sequence:

TCTGGATTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CTTTTCTGGATT

Flanking Amino Acid:

MSTDLLWCEDCGKSLI

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.1

0.83

82.7

29.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

73.5

0.53

0.9

40.5

Minor 5ss

38.4

-1.3

2.7

48.5

40.3

Minor BPS

63.4

0.5

1.5

78.87

37.8

Associated Gene:

Gene:

PLAGL1

Ensembl Gene ID:

ENSAPLG00000007371

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000007641

54237130 - 54262397

25268